Papers of the Week: 30.04 – 05.05.2013

5 05 2013

Papers from this week. [OA] indicates open access, and all are discussable on request.

General Interest, Important:

After he came back from the Beagle voyage, Darwin never set foot on a boat again, and he became a sort of recluse, using a mysterious illness as an excuse to avoid excessive socialising. Opinion has generally been split between him suffering from Chagas Disease, or him merely being a hypochondriac. This paper proposes another hypothesis, that he was suffering from some sort of mitochondrial disease, based on analysis of his maternal family tree: several of his maternal family members died of mitochondrially-caused illnesses, so it was likely he had some sort of mitochondrial dysfunction as well.

I mentioned Osedax back in the very early history of the blog in one of the deep sea posts. They’re fascinating little creatures, a specialised genus from an already highly-specialised annelid family that lives only in extreme marine habitats, have no mouth gut, or anus: the Siboglinidae. They feed by having chemoautotrophic endosymbionts in them, with the only exception being Osedax, a genus first described only in 2004. The Osedax female burrows its hind end into bones that have fallen on the ocean floor, and then branches out into the bone, like a root system. Inside a special organ called the trophosome lie a bunch of gamma-proteobacterial endosymbionts which digest the bone and hand the nutrients off to the mothership. This paper greatly expands our knowledge of this system, by finding that the roots help the bacteria by mass-producing acid to help dissolve the bone, allowing the roots to spread further, and the bacteria to have easier access to bone.

Some more data on the plasticity of the human brain. It’s a pet topic of mine, since I often cross swords with people who think that intelligence is completely genetically hardwired into every individual human, thus throwing away everything we know about the evolutionary history of humans, all of social science, and quite a bit of evolutionary theory too.

I summerised what happened to vertebrates at the end-Triassic in a single slide in my Mesozoic Vertebrates lecture. All the Crurotarsi died out, except for one group, the crocodylomorphs. This paper provides a much higher resolution of what happened to the Crurotarsi. Yes, all but the crocodylomorphs got wiped out, but there was no significant shift in disparity – which means that the crocodylomorphs must have had an incredibly quick and effect adaptive radiation to replace all the other ecotypes.

Just something to freak out those who think that science has gone too far: turtleducks! Frankenstein’s Monster is just one day away! Okay, not really, there was no phenotypic change, but this is very cool nonetheless, showing that cells from two different classes can get developmentally integrated into the adult, at least in the case of duck cells in the adult turtle.

Bioinspired robotics are pretty awesome, and one of the best practical uses of zoology and especially entomology – the modular design of arthropods and insects is very conducive to engineering. I’ve written about insect flight and its complications here and here, and this paper demonstrates a robot that has replicated it. Impressive.

The molecular clock is another one of my pet topics, with my preferred scientific hobby being to shit on the majority of molecular clock studies. See my beef with it in this four-part series: 1, 2, 3, 4. This paper critically discusses molecular clock applications in insects.

The presence of silk-spinning spigots (see my spider lecture) on tarantula feet has been one of the recent controversies of tarantula biology. This could be the death knell for this story: tarantulas have weird stuff happening in their tarsi, but silk-spinning isn’t one of them.

A very interesting exchange happening in TrEE on how sound studies asserting the presence of fossil sexual selection and sexual dimorphism are. Be sure to read the replies by Knell et al. and Mendelson & Shaw. There are valid points raised by all parties.

Like any reasonable environmentalist, I’m a fan and supporter of increased nuclear power. Of course, the irrational public perception and fear of nuclear power is one of the larger impediments. The papers here are level-headed and show that nuclear power must be a key transitional power source to wean us off of fossil fuels. Read the rest of this entry »





Reading List: Human Evolution papers

20 04 2013

The following is the reading list I would give to a typical undergraduate human evolution course. The purpose is not to give the students papers with the descriptions of every new fossil species (a perusal of Wikipedia can get you all their names), but to provide a comprehensive overview of the breadth of human evolution research beyond the palaeontology, as well as general reviews that may be dated – a critical skill for any science student is to be able to dig out advances that have happened since the publication of a paper and put these advances within the general research context.

Sorted alphabetically by author, not by importance. Links lead to abstracts, privately-hosted PDF links also included. You can batch download all papers from this Dropbox folder. Also check out the listing of recommended books on human evolution.

Papers:





Reading List: Human Evolution books

20 04 2013

These are scientific books about human evolution I always recommend. The target audiences run the gamut from academics to lay public, all are dumped together.

Sorted alphabetically by author name. Also check out my human evolution reading list for undergrads.





Top Research of 2012: Human Evolution

5 01 2013

Jump to: Arthropods; Botany; Developmental Biology; Ecology; Evolution; Environmental; Geology; Historical Geology; Palaeontology; Zoology.

My top 10 picks for research dealing broadly with human evolution, which I categorise broadly from primates all the way to cultural evolution in Homo sapiens. I only call it “human evolution” because that gets people’s attention. The master list contains 29 papers. [OA] indicates open access papers.


10. Evolutionary Development in Australopithecus africanus.

This paper studies ontogeny – development from child to adult – in Australopithecus africanus (the Taung child). McNulty finds that the species exhibits paedomorphism: the adult resembles the juvenile of the ancestral species. Specifically in this case, the adult resembles juvenile chimps, because the growth rate decreases after the first molar erupts – a fairly early time. The significance here is that it just provides more data points for the role of paedmorphosis and other forms of heterochrony (messing around with the timing of development) in the evolution of hominins.


9. Extremely Rare Interbreeding Events Can Explain Neanderthal DNA in Living Humans. [OA]

One of the most significant findings of the Neanderthal genome sequencing project was that there was Neanderthal DNA in humans, explainable only by saying that humans and Neanderthals interbred (specifically, in the Middle East, before the consequent spreading into Eurasia). The significance, as far as I’m concerned, is only for species concepts in hominins (how can Neanderthals be a separate species if interbreeding was possible?), but it also allows for many interesting questions: how do we explain the presence of 1-4% Neanderthal DNA in non-African humans? Why isn’t there more? How frequent and common was the interbreeding? This paper attempts to answer these with a probabilistic population genetics model in which humans and Neanderthals are equally fit and coexisting (if that assumption bothers you, it actually squares up with recent research into Neanderthal biology, so it’s warranted). The result is that successful interbreeding was quite rare: 1 pair every 77 generation is enough, although more are allowed by the model with slightly less probability. The rarity of the events is either due to biological reasons (sterile hybrids) or, more interestingly, due to cultural segregation.

Speaking of Neanderthals and humans, Volcanic ash layers illuminate the resilience of Neanderthals and early modern humans to natural hazards shows that they both weren’t much bothered by natural disasters.


8. Evolutionary morphology, cranial biomechanics and the origins of tarsiers and anthropoids.

tarsier

This is a detailed paper on the tarsier fossil record, and what it says about the evolution of tarsiers and especially their skull. It’s significant to study these because tarsiers are pretty close to the anthropoids (the group of primates that includes great apes and monkeys, i.e. humans as well), either as a sister group or as a final remnant of a larger and now mostly extinct clade. The authors support the latter hypothesis, but do admit that the fossil record is currently too sparse to support either view conclusively. Their most important evidence is in the skulls. Tarsiers, as the drawing above shows, have huge eyeballs – the largest relative eyeball size in all mammals. Associated with this is a highly-specialised skull to support the eyeballs and their knocking about as the tarsier leaps around trees. Fossil tarsiiforms also have a similar skull, therefore modern tarsiers must be nested within that group. Otherwise, they would have had to have evolved convergently, which just isn’t parsimonious. However, it’s also true that the body fossil record of these tarsiiforms doesn’t show that they were leaping animals like modern tarsiers. Read the paper for much more in-depth discussion – it also serves as an excellent review paper, including on the history of research into tarsier origins. It also has interesting things to say about how phylogenetics should work – not by calculation, but by functional and ecological consideration. And that’s a view I sympathise with (I try to incorporate both in my own research).


7. U-Series Dating of Paleolithic Art in 11 Caves in Spain.

art

In this paper, Pike et al. present their absolute dating of cave art Spain. The difference from previous studies is that previous studies have not dated the art itself, but the calcite that covers it, which introduces uncertainties into the dating; this study dates the actual artwork directly. The most significant find is a pushing of the oldest cave art by 4000 years: the prvious record was in Grotte Chauvet, France, at 35-39 ka. The new record is from El Castillo at 40.8 ka. The other significant finding is the confirmation that there is indeed an increase in artistic complexity over time, both visually and spiritually.

Such increasing complexity is emblematic of human culture. In Identification of the Social and Cognitive Processes Underlying Human Cumulative Culture, Dean et al. show how humans differ from chimpanzees and capuchins in their cultural transmission methods, allowing future generations to build on the insights of previous humans. It all has to do with our enhanced social cognition, with the four keywords being: pedagogy, communication, imitation, prosociality.


6. Late Middle Eocene primate from Myanmar and the initial anthropoid colonization of Africa.

afrasia

This paper describes the teeth of a new species, Afrasia djijidae, from the late Middle Eocene of Myanmar. The authors conclude that it’s the sister taxon to the contemporaneous Afrotarsius libycus from Libya. If this isn’t the result of convergence, then this gives us a precise timing for at least one dispersal of stem anthropoids into Africa: an Afrasia population migrated across the Tethys to Africa and radiated. It’s very likely that this was one of many such dispersal events however, so don’t go around treating Afrasia as your n(great)-grandfather – there could well have been other stem anthropoid dispersals, if phylogenies are to be trusted (they are).


5. Insights into hominid evolution from the gorilla genome sequence. [OA]

gorilla

The biggest surprise here is that gorillas are really, really close to humans. I would be interested in seeing a brand new thorough phylogenetic study of African great apes, taking phylogenomics (all African great apes are now sequenced) and morphology into account. In any case, there’s a lot of information in this paper, and it’s open access, so go ahead and read it. The key points to take away are that there is a lot of parallel genetic evolution that took place in gorillas, humans, and chimps; and gorillas split away from chimps and humans 10 million years ago.


4. New fossils from Koobi Fora in northern Kenya confirm taxonomic diversity in early Homo.

This paper describes two lower jaws and a face discovered in 1.78-1.95 Ma deposits in Kenya. I can’t go into the details of them in any comprehensible way, suffice it to say that they’re only 2 new Homo species.

With the addition of more Homo species on the basis of only morphology, there are always detractors that find the evidence tenuous and would rather have larger, more inclusive species (they’re called lumpers, as opposed to splitters who like many species). In Unexpectedly many extinct hominins, phylogenetic methods are applied to estimate how many extinct species should be expected from the hominin fossil record. 8 is the optimal number, but up to 27 can be accomodated. So, split away.

For an in-depth look at how splitters and lumpers debate, check out The status of Homo heidelbergensis (Schoetensack 1908) [OA], which goes through the arguments proposed for making H. heidelbergensis a new species.


3. The diet of Australopithecus sediba.

Those of you who follow human evolution remember the huge splash Australopithecus sediba made back in 2010, with 5 papers describing it and its surroundings in one issue of Science. Add this paper to those ones: it describes what A. sediba ate, on the basis of dental wear, isotopes, and preserved microfossils on the teeth. They were herbivores, feeding on leaves and fruit, much like chimpanzees.


2. Metopic suture of Taung (Australopithecus africanus) and its implications for hominin brain evolution. [OA]

metopicsuture

Newborn ape skulls have a hole called the anterior fontanelle (F above). In chimps, this hole closes very early (before eruption of the first molars), while in human newborns it happens after (well, in most humans anyway). The closing is done by the fusion of the metopic sutures (M above)in the skull. The paper says is that this delay in the fusion was a key characteristic that allowed humans to expand their brain size, for three possible reasons: the growth of the frontal neocortex required changes in the skull structure and its organisation, leading to the delayed fusion; the hole gives the head some squishiness, allowing the head to fit through the very tight birth canal; the very high growth rate of the brain demands an expansive skull, provided by the fontanelle. However, it’s not a settled issue, because there are still several questions and holes (heh) in the hypothesis. Most importantly, there is no evidence showing that australopiths, the early hominids used in this study as evidence for the hypothesis, even had a tight trip through the birth canal. If it’s roomy, then their fontanelle is pretty much useless and the hypothesis isn’t very solid. The second issue is that we don’t know whether the fontanelle really is that important. Can we give birth naturally to non-fontanelled babies? If we can, again, these adaptive hypotheses aren’t very good. Third of all, the fusion of the metopic suture may not even be “predetermined”, and may in fact just arise naturally through biomechanics (chewing especially puts pressure on the skull and may lead to the fusion in the newborn). Again, the lack of an inheritable pathway puts the adaptive hypotheses on shaky ground.


1. A new hominin foot from Ethiopia shows multiple Pliocene bipedal adaptations.

foot

The popular narrative of chimp-like ancestors coming down from trees, going out into the savannah and becoming humans is increasingly being shown to be oversimplified to the point of wrongness (and I’ll be damned if creationists quote-mine me there). The foot fossils described here add to the complexity of the story. They’re eight bones from a right foot, from a 3.2 – 3.8 Ma locality in Ethiopia. The graph above shows why the foot is significant: it’s the black star, and clusters neatly with humans and gorillas – the non-tree dwelling apes. Anatomical examination shows that the foot is equally adapted to grasping tree branches and to being walked on – in other words, the species that had it was at least facultatively bipedal. What this means in the larger context of human evolution is that bipedalism isn’t something special – it can, and has, evolved convergently.


Jump to: Arthropods; Botany; Developmental Biology; Ecology; Evolution; Environmental; Geology; Historical Geology; Palaeontology; Zoology.





Top Books of 2012: Palaeontology

24 12 2012

Jump to another list: Environmental and Climate Change; Evolution; Historical Geology; History of ScienceHuman Evolution and Anthropology; Zoology

These are my top 10 palaeontology books of the year, running the gamut from historically-oriented books detailing the histories of palaeontological discoveries and of the science of palaeontology to books about now-extinct animals (e.g. dinosaurs). There is one children’s book (about dinosaurs, of course; #10), with most of the books aimed at educated laymen or working biologists; a couple of purely academic books are mixed in too.

  1. Long. The Dawn of the Deed: The Prehistoric Origins of Sex. (University of Chicago Press)
9780226492544_p0_v1_s260x420 I had to debate myself about whether to put this awesome book in the zoology or the palaeontology section, because it is part overview of weird ways animals have sex, and part scientific memoir of Long’s palaeontological research and findings. In the end, the palaeontological stuff wins out, because Long uses his research to illuminate the evolution of sex. In any case, I recommend anyone to read this book just for the quirkiness described in it, and also to see how exceptional finds in palaeontology can give us insights into things we wouldn’t think palaeontology would have a say about.

  1. Falk. The Fossil Chronicles: How Two Controversial Discoveries Changed Our View of Human Evolution. (University of Chicago Press)
full-cover-Falk_Fossil-206x300 A 2012 paperback release of a 2011 hardback, this book is an insider’s account of the scientific and popular controversies of the varying interpretations of the Taung child and of Homo floresiensis. I have a thing for these kinds of books that don’t just talk about the facts, but also give the perspective of the scientist who is working on them, because it gives the best view on how real science evolves and progresses, away from the idealised conceptions of philosophers. This book is an excellent showcase of that, using two prominent fossil cases and described by Falk, whose illustrious career in part revolved around them.

  1. Fastovsky & Weishampel. Dinosaurs: A Concise Natural History. (Cambridge University Press)
dinosaurs-a-concise-natural-history This is the ultimate book for someone who’s not a dinosaur palaeontologist, but is nonetheless interested in the biology and study of dinosaurs. It’s not a textbook, but it’s not some picture guide. It’s a comprehensive overview of what we currently know about dinosaurs, without the niggly anatomical details that a proper textbook like The Dinosauria would have. It also discusses the open questions that we have. In all, a great resource for anyone from the serious amateur to the professor stuck teaching about dinosaurs even though they’re not his/her specialty (it’s happened to me several times).

  1. Sánchez. Embryos in Deep Time: The Rock Record of Biological Development. (University of California Press)
9780520271937 Non-palaeontologists are often surprised at the fact that we have preserved life history stages of various animals – from vertebrates of different ages to the moult stages of trilobites (the majority of trilobite fossils are in fact exoskeletons discarded after moulting). This book exposes them all to show the utility of palaeontology in studying the evolution of development. I was impressed by the phylogenetic breadth it covers, including examples I had no idea about.

  1. Sepkoski. Rereading the Fossil Record: The Growth of Paleobiology as an Evolutionary Discipline. (University of Chicago Press)
rereading-the-fossil-record-the-growth-of-paleobiology-as-an-evolutionary-discipline This book arguably belongs in the history of science list, but I’ll put it here because it’s more relevant to palaeontology as a science. It’s an outline of the history of palaeobiology, the field that combines palaeontology and evolutionary biology, using fossils to study evolution and evolutionary patterns. For a long time, palaeontologists were regarded as irrelevant stamp collectors (it’s a view that still persists among idiotic scientists); palaeobiology turned that over on its head. The book overall is excellent, going from the 19th century to the present; if I had one qualm, it’s what I perceive as a bit of US-centrism, but that may be due to my education in Germany exposing me to palaeontologists who presaged palaeobiology’s development as a field.

  1. Maxwell. Piltdown Man and Other Hoaxes: A book about Lies, Legends, and the Search for the Missing Link. (American Book Publishing)
piltdown-man-other-hoaxes-book-about-lies-legends-jonathan-maxwell-paperback-cover-art A book on scientific hoaxes. It’s not an academic text, just a breeze through some prominent ones, especially those involving palaeontology and cryptozoology. I include it here because of the large section on Piltdown Man.

  1. Berta. Return to the Sea: The Life and Evolutionary Times of Marine Mammals. (University of California Press)
return-to-the-sea-the-life-and-evolutionary-times-of-marine-mammals Arguably a book that should be in the zoology list, I put it here because it discusses the fossil history of cetaceans and pinnipeds and takes a deep time view of everything. Despite its somewhat high price, it’s actually easy-reading and I easily recommend it to the interested layman.

  1. Reynolds & Gallagher. African Genesis: Perspectives on Hominin Evolution. (Cambridge University Press)
african-genesis-perspectives-on-hominin-evolution Please note that there’s a strange screwup with Amazon link above: the title is some weird quantum stuff, but the rest of the page is on this book. This is an academic text containing a comprehensive review of all known hominin fossils and what they tell us about human evolution, as well as current open questions and unknowns. Not easy reading, but if you’re a palaeontologist or palaeoanthropologist looking for the most up-to-date human palaeontology compendium, this is it.

  1. Meredith. Born in Africa: The Quest for the Origins of Human Life. (PublicAffairs)
born-in-africa-the-quest-for-the-origins-of-human-life A 2012 paperback of a 2011 hardback, this is a book bridging history of science with human palaeontology, explaining the history of the major findings in human palaeontology and their implications, and how our views on hominin evolution have evolved in the light of new discoveries. Highly recommended if you’re into human evolution (I’m not, hence the low placing).

  1. Gee & Rey (ill.). A Field Guide to Dinosaurs: The Essential Handbook for Travelers in the Mesozoic. (Chartwell Books)
9780785829027 This is by far the current best dinosaur book for children. It’s got gorgeous illustrations by Luis Rey, one of the top palaeoartists today, it’s as accurate as can be for the intended audience, and the descriptions and information are even usable for middle and high school students. So, in all, if you’re looking for a book to give to a child or teen who’s fascinated by dinosaurs, this is the ultimate one.

Jump to another list: Environmental and Climate Change; Evolution; Historical Geology; History of ScienceHuman Evolution and Anthropology; Zoology





Top Books of 2012: Human Evolution and Anthropology

23 12 2012

Jump to another list: Environmental and Climate Change; Evolution; Historical Geology; History of Science; Palaeontology; Zoology

These are books about human evolution, anthropology, and related subjects. Most are in the “educated layman” or undergrad category, with some layman and some complete academic books.

  1. Mitani, Call, Kappeler, Palombit & Silk (eds.). The Evolution of Primate Societies. (University of Chicago Press)
9780226531724 No general discussion of human “nature” and sociology is valid without reference to our evolutionary ancestry. If it’s one of your favourite discussion topics, then get this book so you don’t make elementary mistakes. It basically reviews the ecology, behaviour, and sociology of the social primates and thus allows you to make comparisons. It’s also a surprisingly affordable book for its content.

  1. Hetherington. Living in a Dangerous Climate: Climate Change and Human Evolution. (Cambridge University Press)
living-in-a-dangerous-climate-climate-change-and-human-evolution My most basic summary quip of human evolution goes like this: “Humans are a primate species that got super-lucky with coincidental climate changes allowing them to spread globally.” Because that basically sums it up – our evolution was enabled and pushed first and foremost by climate. That much is clear from any historical geology or human evolution book, and what makes this book great is that it doesn’t look at our evolutioary past, but also to how our self-inflicted climate changes will affect us in the future.

  1. Fuentes. Race, Monogamy, and Other Lies They Told You: Busting Myths about Human Nature. (University of California Press)
race-monogamy-and-other-lies-they-told-you This is a must-read book by everyone. Period. I actually waste a significant amount of time every week trying to drill the stuff told in this book into the heads of ignorant morons who think that there really are living human subspecies who also think that men and women are totally different species, and who think that societally-engendered tropes are actually reflections of biological realities. It’s infuriating, and this book is a one-stop shop for debunking all these idiocies and more. Get it if you buy into them or hang around people who do.

  1. Stringer & Andrews. The Complete World of Human Evolution. (2nd ed.; Thames & Hudson)
the-complete-world-of-human-evolution If you need an affordable, authoritative, up-to-date guide on the ape fossil record (including humans, obviously), this book is exactly what you’re looking for. It’s written specifically for a lay audience – besides the chapters on the fossils, there are introductory chapters introducing palaeontological techniques, so you know how all the information is gathered. It also has a lot of diagrams for easy and effective visual comparisons. All in all, an excellent and comprehensive guide to human evolution that’s accessible to anyone.

  1. Wilson. Consider the Fork: A History of How We Cook and Eat. (Basic Books)
13587130 I classify this book as an anthropological one. It discusses the history of cooking and eating from the discovery of fire to our modern hi-tech kitchens. Some may protest my including it here, but our food has always been one of the important factors in our evolution (from fire to agriculture to the myriad local adaptations, e.g. the teeth of Peruvians, or convergent lactose tolerance in several population; see book 10), so this is a useful book to keep, even if the majority of it focuses on cooking methods rather than the food itself. Plus, it’s pretty interesting!

  1. Stinson, Bogin & O’Rourke (eds.). Human Biology: An Evolutionary and Biocultural Perspective. (2nd ed.; Wiley-Blackwell)
0470179643 This is an academic textbook and is, as far as I can tell, the class of the field when it comes to anthropology: it covers both physical and biological anthropology, and all the links between them. If you’re an anthropology student looking to borrow a book from the library, this is the one you should be looking for (if you’re a student, you probably can’t afford to buy it anyway).

  1. De Duve. Genetics of Original Sin: The Impact of Natural Selection on the Future of Humanity. (Yale University Press)
genetics-of-original-sin-the-impact-of-natural-selection-on-the-future-of-humanity A new paperback release of an older hardback. I don’t care much for the theological blah that occasionally crops up in this book, nor for its ultimate conclusion that we can rise against the power of natural selection, but it is a worthy read because it basically sums up how various social traits that evolution has built into us will basically be our downfall.

  1. Hochberg. Evo-Devo of Child Growth: Treatise on Child Growth and Human Evolution. (Wiley-Blackwell)
170802 One of the critical milestones in human evolution is the addition of a childhood to the life cycle, a period when development occurs very rapidly under the influence of environmental factors. It’s unique to humans, and underlies a lot of our psychology and sociology. This is another academic text, and it has a medical focus, but overall it’s a great book exploring the various stages of childhood and how they relate to our evolution.

  1. Stringer. The Origin of Our Species. (Penguin Books)
The-Origin-of-Our-Species A paperback release of an older hardback. This is the best ultra-basic introduction to human evolution. Get it if you think #4 is too daunting.

  1. Ulijazsek, Mann & Elton. Evolving Human Nutrition: Implications for Public Health. (Cambridge University Press)
evolving-human-nutrition If my blurb to #5 about the importance of food to human evolution intrigued you, then this is the book you’ll want for a comprehensive academic treatment of the subject.

Jump to another list: Environmental and Climate Change; Evolution; Historical Geology; History of Science; Palaeontology; Zoology





Most Interesting Papers of the Week

9 12 2012

These are papers that may be of general interest published this week, with commentary as necessary. No specific case studies, overly specialised research, or taxonomic papers. Papers ordered only by their appearance in my inbox. For PDFs, e-mail me, I get most of them. You can request an in-depth analysis of any paper and I’ll do it as I get the time.

Open-access papers, those that are free to read/download even without an academic connection, are tagged with [OA] for easy finding with your browser’s text search (Ctrl+F).

12 papers this week, 4 of them open access.

New Books in the Store:

Special Issues:

“Evolutionary rescue” happens when a population or species becomes adapted to environments which are lethal to its ancestors. This special issue is full of case studies and examinations of the phenomenon from a theoretical level, so worth reading if this interests you. Schiffer et al. is the only [OA] paper, luckily it’s one of the more interesting ones.

An amazing special issue on one of the coolest phenomena in biology, one which I’ve written about before: parasites that take over and manipulate their hosts’ behaviour. All the papers here are excellent reviews.

If you’re even remotely interested in human evolution, get the papers from this special issue. They cover everything, from development in hominins to morphology to brain to language and ecology. Very highly recommended.

Botany:

Given just how dependent on physical factors plant development is, it’s no wonder that they develop somewhat differently in space with no gravity. This research is cool because it allows us to narrow down exactly what is gravbity-dependent and what isn’t. Besides this, it’s also useful in case we ever get around to establishing space colonies or something.

Evolution:

An introduction to caves as ideal nmatural arenas for evolution isn’t needed. This paper demonstrates that in caves, evolution will be canalised to form distinct morphological classes, and that the emergence of these classes is dependent on the cave habitat to which a species is adapting. That this happens for the entire community is the remarkable result, meaning that these morphologies are ecomorphs, not just specific adaptations. Of course, this study was only done with one genus, but the same result being found with a broader taxonomic study wouldn’t surprise me.

This is what I would love to do if I had money and a lab.

History:

This is an excellent look at the history of ideas about speciation, and also serves as a glossary/dictionary. Worth keeping just as a reference.

Microbiology:

This is of interest for those who are into endosymbiosis.

Palaeontology:

Amazing find that will require me to update my stock history of life lecture, specifically the part that says that the only mammals that survived past the KT event were marsupials and placentals. This Miocene fossil is a mammal and is neither a marsupial nor a placental. Okay, I’m overblowing it a bit, since apparently this has been known for a bit, but it’s the first I’ve heard of it (and I consider myself as keeping abreast of the literature). So, still spectacular.

This is significant for those interested in the evolution of birds.

Here, we redescribe the wings of the archaic bird Archaeopteryx lithographica and the dinosaur Anchiornis huxleyi and show that their wings differ from those of Neornithes in being composed of multiple layers of feathers. In Archaeopteryx, primaries are overlapped by long dorsal and ventral coverts. Anchiornis has a similar configuration but is more primitive in having short, slender, symmetrical remiges. Archaeopteryx and Anchiornis therefore appear to represent early experiments in the evolution of the wing. This primitive configuration has important functional implications: although the slender feather shafts of Archaeopteryx and Anchiornis make individual feathers weak, layering of the wing feathers may have produced a strong airfoil. Furthermore, the layered arrangement may have prevented the feathers from forming a slotted tip or separating to reduce drag on the upstroke. The wings of early birds therefore may have lacked the range of functions seen in Neornithes, limiting their flight ability.

Phylogenetics:

It never ceases to surprise me that this isn’t straightforward and clear. Remember: fossils provide the only tangible evidence for how traits evolved. They’re the baseline information against which everything else must be checked for validity.

Zoology:

In zoology, “gordian knot” refers to an aggregation of mating nematomorphs (hairworms) – the normally free-living aquatic organisms gather into a tight ball, imaginarily reminiscent of Midas’s legendary knot. This study looked at what exactly happens in these Gordian knots. I was surprised that the knots are first composed entirely of males, with females getting in the mix later.

I mentioned chemosynthesis in the deep sea in two of my deep sea posts. This paper is a thorough review, concentrating on those organisms that can survive solely by chemosynthesis and not rely indirectly on photosynthetic products, like oxygen or marine snow.

This paper has a ton of coauthors and it’s not a genomic paper? Expectations are automatically raised then. And it doesn’t fail – it serves as a standard reference for how many marine species have been described so far. I will need to read the statistics for how many exist in total more carefully as I’m a bit skeptical of the number they predict (0.7 – 1 million) – it seems rather low to me. Still, get it if you’re interested in biodiversity.

The neural crest has long been considered the key innovation that allowed vertebrates to achieve their evolutionary success. Some authors even go as far as treating it as a fourth germ layer. Basically, the neural crest is a dorsal fold of the neural tube from which a population of migratory multipotent cells is derived. These migrate along specific pathways to form, among other things: the skull and face, teeth, a lot of the heart and circulatory vessels, pigment cells, the spinal column and the peripheral nervous system, and the thyroid and adrenal glands.It’s also long been known that its evolution was not a spontaneous one, but that glimmers of it can be seen in other chordates. This paper is significant in that it identifies more than “glimmers”: it identifies a full-fledged neural crest in a tunicate.





Top Papers of the Week: 06.02-12.02

15 02 2012

Excuse the belatedness of this post, I had a talk to prepare.

The master list for this week is here. Only those categories with more than one paper will be considered. Taxonomy will be exempt, because new species descriptions isn’t the kind of thing I can choose between. Read the rest of this entry »





Weekly Research: March 21-27, 2011

28 03 2011

Read the rest of this entry »





Human Evolution: Australopithecus

27 10 2010

Before getting started, a word on terminology: I will try to use genus names (Homo, Australopithecus, etc) or their abbreviations as much as possible, instead of saying ‘hominid’ or ‘hominin’, the reason being that those two words have traditionally been thrown around erroneously and without definition (is it only Homo? Is it all the Old World apes?). If I do happen to say hominin, I will mean those apes that diverged from the chimps already, not necessarily the genus Homo. Hominid I reserve to members of Homo. Read the rest of this entry »








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